HRM can import and export images from/to a local or remote OMERO server.
This feature is not active by default. Ask the HRM administrator for more information about the HRM/OMERO connector.
If the connection between HRM and OMERO is enabled the OMERO logo will be is displayed in the Raw images and Results folders.
Click on . The following window will ask you to enter your OMERO login credentials.
Upon logging in successfully a file tree will be displayed listing all the images in the OMERO repository that you are allowed to visualize, like this:
The OMERO credentials and file tree will be used throughout the HRM session. When the session is closed HRM will remove the OMERO credentials from the cache.
The OMERO tree is requested automatically only the first time in every HRM session. This saves waiting time in subsequent import/export operations with OMERO. To force a tree rebuild click .
The following actions are possible:
Import data from OMERO: In the Raw images folder select an image from the OMERO tree and click . The image will be imported to HRM with extension .ome.tiff. Select more images with Ctrl + click for importing multiple images in one go.
Export data to OMERO: In the Results folder select the HRM image to be exported. Select the target OMERO dataset. Click . The image will be attached to the OMERO project with an annotation describing all the parameters used for deconvolution. Select more images from the Results folder for exporting multiple images in one go.